Recorded talks on YouTube
fab2018.cbd.cmu.edu/videos
The full workshop program (updated: 27 September) is now available for download as a PDF. We will have hard copies available for attendees when they register on site.
The tentative schedule below may change slightly before the meeting. All events will be held in the Gates-Hillman Conference Center (GHC 6115) unless noted otherwise. Directions to the Gates-Hillman Center can be found on the attending page.
| Thursday, September 27, 2018 | ||
| 6:00 PM | Opening Reception Gates-Hillman Center Creative Commons (until 8:00 PM) |
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| Friday, September 28, 2018 | ||
| 8:00 AM | Breakfast | |
| 8:45 AM | Opening Remarks | |
| 9:00 AM | Trey Ideker | Towards a structure/function simulation of a cancer cell |
| 10:00 AM | Saket Navlakha | Algorithms: a future language of biology? |
| 10:30 AM | Coffee Break | |
| 10:45 AM | Fabio Vandin | Finding patterns in cancer genomes: algorithms and challenges |
| 11:15 AM | Ana Ligia Scott | Protein-protein docking, protein-ligand docking and QM/MM calculation considering functional movements: advantages, challenges and problems |
| 11:45 AM | Jinbo Xu | Fast and accurate ab initio folding by deep learning |
| 12:15 PM | Lunch Break | |
| 1:15 PM | Lightning Talks | |
| 1:45 PM | Panel Discussion | |
| 2:15 PM | Olgica Milenkovic | Higher-order and constrained clustering for genomic data analysis |
| 2:45 PM | Laxmi Parida | Algorithms in biology: a shift in paradigm |
| 3:15 PM | John Kececioglu | Parameter inference and parameter advising in computational biology |
| 3:45 PM | Poster Session | |
| 4:45 PM | Nadia El-Mabrouk | Future of algorithms for gene family evolution prediction |
| Saturday, September 29, 2018 | ||
| 8:00 AM | Breakfast | |
| 9:00 AM | Zhiping Weng | The temporal landscape of recursive splicing during Pol II transcription elongation in human cells |
| 9:30 AM | Gregory Johnson & Rory Donovan-Maiye | Building a Babel Fish for biology (and making it useful for biologists) |
| 10:00 AM | Lightning Talks | |
| 10:30 AM | Coffee Break | |
| 10:45 AM | White Paper Preparation | |
| 11:15 AM | Christina Boucher | Scalable data structures: challenges and advancements |
| 11:45 AM | Kathy Tzeng | Challenges in genomics medicine |
| 12:15 PM | Lunch Break | |
| 1:15 PM | S. Cenk Sahinalp | Algorithmic approaches for tumor phylogeny reconstruction via integrative use of single cell and bulk sequencing data |
| 1:45 PM | Gaudenz Danuser | Inferring causality in molecular pathways from image fluctuations |
| 2:45 PM | Closing Remarks | |